Katerina Douka, Isabel Birds, Dapeng Wang, Sophie Clayton, Abigail Byford, Elton Jose Rosas Vasconcelos, Mary J O'Connell, Jim Deuchars, Adrian Whitehouse, Julie L Aspden. LncRNAs interacting with the translation machinery contribute to human neuronal differentiation. bioRxiv https://doi.org/10.1101/2020.10.01.321919; (2020)
Tayah Hopes, Michaela Agapiou, Karl Norris, Charley G.P. McCarthy, Mary J O’Connell, Juan Fontana#, Julie L Aspden#.
Specialisation of ribosomes in gonads through paralog-switching.
bioRxiv doi: https://doi.org/10.1101/2020.01.20.913020 (2020) # Corresponding authors
Mukhil Raveendran, Anna Rose Leach*, Tayah Hopes, Julie L. Aspden#, Paolo Actis#.
Ribosome fingerprinting with solid-state nanopore
Pedro Patraquim, Jose I. Pueyo, M. Ali Mumtaz, Julie L. Aspden, J.P. Couso,
Developmental regulation of Canonical and small ORF translation from mRNA.
Genome Biology 21:128, (2020).
I Tsagakis, K Douka, I Birds, JL Aspden.
Long non‐coding RNAs in development and disease: conservation to mechanisms.
The Journal of Pathology 250 (5), 480-495 (2020) Review
McCartney AM, Hyland EM, Cormican P, Moran RJ, Webb AE, Lee KD, Hernandez J, Prado-Martinez J, Creevey CJ, Aspden, JL, McInerney JO, Marques-Bonet T, and O’Connell MJ*.
Gene Fusions derived by transcriptional readthrough are Driven by Segmental Duplication in Human. . Genome Biology and Evolution, 11 (9), 2678–2690, (2019).
Aspden, J. L., Eyre-Walker, Y. C., Philips, R., Amin, U., Mumtaz, A. S., Brocard, M., Couso, J. P.
Extensive translation of small ORFs revealed by Poly-Ribo-Seq.
eLife 10.7554/eLife.03528 (2014).
Rogulja-Ortmann, A., Picao-Osorio, J., Villava, C., Patraquim, P., Lafuente, E., Aspden, J., Thomsen, S., Technau, G.M. and Alonso, C.R.
The RNA binding protein ELAV/Hu regulates Hox RNA processing, expression and function within the Drosophila nervous system.
Development 141:2046-56 (2014).
Taliaferro, J.M., Marwha, D., Aspden, J.L., Mavrici, D., Cheng, N.E., Kohlstaedt L.A., Rio, D.C.
The Drosophila splicing factor PSI is phosphorylated by Casein Kinase II and Tousled-Like Kinase.
PLoS One 8(2):e56401(2013).
Taliaferro, J.M., Aspden, J. L., Bradley, T., Marwha, D., Blanchette, M., Rio, D. C.
Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression.
Genes & Development 27 (4), 378-389 (2013).
Brooks, A. N. *, Aspden, J. L. *, Podgornaia, A. I., Rio, D. C. & Brenner, S. E.
Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans. *These authors contributed equally to this work
RNA 17, 1884-1894 (2011).
Hellsten, U. *, Aspden, J. L. *, Rio, D. C. & Rokhsar, D. S.
A segmental genomic duplication generates a functional intron. *These authors contributed equally to this work.
Nature Communications 2, 454 (2011).
Song, E. J., Werner, S. L., Neubauer, J., Stegmeier, F., Aspden, J., Rio, D., Harper, J. W., Elledge, S. J., Kirschner, M. W., & Rape, M.
The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome.
Genes & Development 24, 1434-1447 (2010).
Aspden, J. L. & Jackson, R. J.
Differential effects of nucleotide analogs on scanning-dependent initiation and elongation of mammalian mRNA translation in vitro.
RNA 16, 1130-1137 (2010).
Tayah Hopes, Michaela Agapiou, Karl Norris, Charley G.P. McCarthy, Mary J O’Connell, Juan Fontana#, Julie L Aspden#.
Specialisation of ribosomes in gonads through paralog-switching.
bioRxiv doi: https://doi.org/10.1101/2020.01.20.913020 (2020) # Corresponding authors
Mukhil Raveendran, Anna Rose Leach*, Tayah Hopes, Julie L. Aspden#, Paolo Actis#.
Ribosome fingerprinting with solid-state nanopore
Pedro Patraquim, Jose I. Pueyo, M. Ali Mumtaz, Julie L. Aspden, J.P. Couso,
Developmental regulation of Canonical and small ORF translation from mRNA.
Genome Biology 21:128, (2020).
I Tsagakis, K Douka, I Birds, JL Aspden.
Long non‐coding RNAs in development and disease: conservation to mechanisms.
The Journal of Pathology 250 (5), 480-495 (2020) Review
McCartney AM, Hyland EM, Cormican P, Moran RJ, Webb AE, Lee KD, Hernandez J, Prado-Martinez J, Creevey CJ, Aspden, JL, McInerney JO, Marques-Bonet T, and O’Connell MJ*.
Gene Fusions derived by transcriptional readthrough are Driven by Segmental Duplication in Human. . Genome Biology and Evolution, 11 (9), 2678–2690, (2019).
Aspden, J. L., Eyre-Walker, Y. C., Philips, R., Amin, U., Mumtaz, A. S., Brocard, M., Couso, J. P.
Extensive translation of small ORFs revealed by Poly-Ribo-Seq.
eLife 10.7554/eLife.03528 (2014).
Rogulja-Ortmann, A., Picao-Osorio, J., Villava, C., Patraquim, P., Lafuente, E., Aspden, J., Thomsen, S., Technau, G.M. and Alonso, C.R.
The RNA binding protein ELAV/Hu regulates Hox RNA processing, expression and function within the Drosophila nervous system.
Development 141:2046-56 (2014).
Taliaferro, J.M., Marwha, D., Aspden, J.L., Mavrici, D., Cheng, N.E., Kohlstaedt L.A., Rio, D.C.
The Drosophila splicing factor PSI is phosphorylated by Casein Kinase II and Tousled-Like Kinase.
PLoS One 8(2):e56401(2013).
Taliaferro, J.M., Aspden, J. L., Bradley, T., Marwha, D., Blanchette, M., Rio, D. C.
Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression.
Genes & Development 27 (4), 378-389 (2013).
Brooks, A. N. *, Aspden, J. L. *, Podgornaia, A. I., Rio, D. C. & Brenner, S. E.
Identification and experimental validation of splicing regulatory elements in Drosophila melanogaster reveals functionally conserved splicing enhancers in metazoans. *These authors contributed equally to this work
RNA 17, 1884-1894 (2011).
Hellsten, U. *, Aspden, J. L. *, Rio, D. C. & Rokhsar, D. S.
A segmental genomic duplication generates a functional intron. *These authors contributed equally to this work.
Nature Communications 2, 454 (2011).
Song, E. J., Werner, S. L., Neubauer, J., Stegmeier, F., Aspden, J., Rio, D., Harper, J. W., Elledge, S. J., Kirschner, M. W., & Rape, M.
The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome.
Genes & Development 24, 1434-1447 (2010).
Aspden, J. L. & Jackson, R. J.
Differential effects of nucleotide analogs on scanning-dependent initiation and elongation of mammalian mRNA translation in vitro.
RNA 16, 1130-1137 (2010).